If you find that your Clash Verge + Proxifier setup only proxies part of your traffic, double-check whether the port opened from Clash Verge to Proxifier is set to Mixed Port or another type. If it is not set to Mixed Port, change it to Mixed Port, and it should work.
This issue can occur with VS Code and GitHub VS Code.
On the other hand, for VS Code and Docker, if you are using Proxifier, please change your “localhost” proxy rule to Direct instead of Proxy.